PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G144600.1
Common NameB456_011G144600, LOC105777689
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 334aa    MW: 35633.5 Da    PI: 8.2997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G144600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11267312655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri  ++ +L+el+P+     +k  s a++L +Av++Ik Lq
  Gorai.011G144600.1 267 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVQHIKGLQ 312
                         689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.98261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14264327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-11265316No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13266324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MYPSSSSQKP MGQSGLTRYG SAPGSFLANA VDSVIGADPN LVGHYFSAAD SSSLTSESTC  60
KVSSSNDPRE PKSAAAAAPA PPHPPPHHPH GSYPAPSSSS LLRQRSSPAG FLSHLTSENG  120
FSVTMGNRNY SSQGSGNGGH GVSRLKSQLS FTRQDSLSQI SEVSENLVDG VSSNSNHQNP  180
AHSFAAAGFG MDSWDNTNSI VFSAPSSKRA KNLDGDIYNC FNALETQFSL PQTTLEMATV  240
EKLLHIPEDS VPCKIRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MDKQTSYADM  300
LDLAVQHIKG LQNEVQKLHK ELESCTCGCK QSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456514.10.0PREDICTED: transcription factor bHLH128
SwissprotQ8H1021e-100BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0D2UT460.0A0A0D2UT46_G
STRINGVIT_05s0124g00240.t011e-142(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-82bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]